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您的足迹: • recurrence • jiaomi • file_format_header

常用文件格式表头向量

这里收集一个文件格式各列的名称,写成R语言向量的形式,方便复制粘贴。更多格式可以参见genome.ucsc.edu网页。

bed

# 6列的
c("chrom", "chromStart", "chromEnd", "name", "score", "strand")
 
# 12列的
c("chrom", "chromStart", "chromEnd", "name", "score", "strand", 
  "thickStart", "thickEnd", "itemRgb", "blockCount", "blockSizes", "blockStarts")

fa.fai

c("NAME", "LENGTH", "OFFSET", "LINEBASES", "LINEWIDTH")

gff与gtf

# gff
c("seqname", "source", "feature", "start", "end", "score", "strand", "frame", "group")
# gtf
c("seqname", "source", "feature", "start", "end", "score", "strand", "frame", "attribute")

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